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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52199104_52199537_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52199104 - 52199537
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGATCA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTTTCTTAATC
Flanking Amino Acid:
EPKKETPTSQLPLVPESVNN
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
64.7
35.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
41.1
-1
3.1
58.7
45.3
Minor BPS
81.1
0.96
1
82.67
30.6

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047798
52146459 - 52213429
66971
ENSAPLT00000031141
52161786 - 52213429
51644
ENSAPLT00000025247
52161786 - 52213429
51644
ENSAPLT00000006030
52183344 - 52213429
30086