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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52199656_52202259_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52199656 - 52202259
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATCTATAATT
Flanking Amino Acid:
QLLEQQQPQKASPNEENQEG
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
84.6
0.86
1
74
41.2
Major PPT
76.2
0.59
0.9
74.8
39.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
64.2
0.52
1.6
78.66
37.4

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006030
52183344 - 52213429
30086
ENSAPLT00000047798
52146459 - 52213429
66971
ENSAPLT00000031141
52161786 - 52213429
51644
ENSAPLT00000025247
52161786 - 52213429
51644