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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52202649_52203178_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52202649 - 52203178
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTGTAA
5'SS Class:
major
3'SS Sequence:
AAGTATTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATACTGAAAT
Flanking Amino Acid:
RSRSRSRSRSRSPRKRRSRS
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
62.5
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.43
1
62.9
43
Minor 5ss
36.8
-1.5
3.2
46.2
49
Minor BPS
49.5
0.05
1.8
65.49
43.9

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031141
52161786 - 52213429
51644
ENSAPLT00000025247
52161786 - 52213429
51644
ENSAPLT00000006030
52183344 - 52213429
30086
ENSAPLT00000047798
52146459 - 52213429
66971