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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52206418_52206981_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52206418 - 52206981
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TACGATTTAACG
Flanking Amino Acid:
SYKIGSKIIKIAWALNKGVK
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
81.3
0.71
0.9
77.7
40.6
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
53.4
-0
1.7
57.03
44.6

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047798
52146459 - 52213429
66971
ENSAPLT00000031141
52161786 - 52213429
51644
ENSAPLT00000025247
52161786 - 52213429
51644
ENSAPLT00000006030
52183344 - 52213429
30086