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Intron Name: Anas_platyrhynchos_platyrhynchos_3_52208319_52209777_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

52208319 - 52209777

Intron Length:

1459

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTATT

5'SS Class:

major

3'SS Sequence:

TCCATGAAAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTTCCATGAAAA

Flanking Amino Acid:

AYTQPVTMLQIPVAPAVPAV

Intron Amino Acid Position:

645

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.1

84.7

32.4

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

48.3

-0.1

1.2

45.9

38.5

Minor 5ss

44.1

-0.6

2.5

60.5

43.9

Minor BPS

55.3

0.16

1.8

73.17

37.4

Associated Gene:

Gene:

SCAF8

Ensembl Gene ID:

ENSAPLG00000005765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047798

52146459 - 52213429

66971

ENSAPLT00000031141

52161786 - 52213429

51644

ENSAPLT00000025247

52161786 - 52213429

51644

ENSAPLT00000006030

52183344 - 52213429

30086