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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52211364_52211954_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52211364 - 52211954
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTTCTGTTAACT
Flanking Amino Acid:
QISSSENNRAVQSDVSSSSG
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
76
0.59
0.9
73.3
37.2
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
67.4
0.63
2
88.99
35.6

Associated Gene:

Gene:
SCAF8
Ensembl Gene ID:
ENSAPLG00000005765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047798
52146459 - 52213429
66971
ENSAPLT00000031141
52161786 - 52213429
51644
ENSAPLT00000025247
52161786 - 52213429
51644
ENSAPLT00000006030
52183344 - 52213429
30086