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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52366570_52372586_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52366570 - 52372586
Intron Length:
6017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATG
Flanking Amino Acid:
SLSRKKRKLQEPKCKDGSEY
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.9
0.61
0.9
72.3
36.8
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
60.7
0.19
1.7
68.66
39

Associated Gene:

Gene:
TIAM2
Ensembl Gene ID:
ENSAPLG00000005802
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046477
52315862 - 52453785
137924
ENSAPLT00000006037
52315862 - 52452749
136888