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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52390963_52394647_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52390963 - 52394647
Intron Length:
3685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
GKEKRPSITQIFDSAGGHGF
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
TIAM2
Ensembl Gene ID:
ENSAPLG00000005802
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046477
52315862 - 52453785
137924
ENSAPLT00000006037
52315862 - 52452749
136888