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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52450475_52451042_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52450475 - 52451042
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACT
Flanking Amino Acid:
RPETIFQLCSSDSENKTNIV
Intron Amino Acid Position:
1460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80.8
0.69
0.9
74.1
35.3
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
88.3
1.28
0.9
96.56
28.2

Associated Gene:

Gene:
TIAM2
Ensembl Gene ID:
ENSAPLG00000005802
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046477
52315862 - 52453785
137924
ENSAPLT00000006037
52315862 - 52452749
136888