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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52454152_52456821_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52454152 - 52456821
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
CCCCTGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGCTCTTTGCCC
Flanking Amino Acid:
FRRKHCFRGIETLFPESERL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
66.8
38.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
68.6
0.42
0.8
65.2
30.7
Minor 5ss
33.8
-1.8
3.2
39.5
40.3
Minor BPS
44.9
-0.4
3.4
65.88
40.5

Associated Gene:

Gene:
TFB1M
Ensembl Gene ID:
ENSAPLG00000006328
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006580
52453899 - 52479720
25822