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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52474565_52477808_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52474565 - 52477808
Intron Length:
3244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAACT
5'SS Class:
major
3'SS Sequence:
TGCTTACAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GCTTGCTTACAA
Flanking Amino Acid:
KDPRFIPGLQMLSEAAPGKV
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.2
70.8
39.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
64.6
0.33
1
59.6
40
Minor 5ss
47.7
-0.2
2.6
67.9
42.7
Minor BPS
48
-0.1
2.1
61
44.9

Associated Gene:

Gene:
TFB1M
Ensembl Gene ID:
ENSAPLG00000006328
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006580
52453899 - 52479720
25822