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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52477961_52479528_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52477961 - 52479528
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAATAC
5'SS Class:
major
3'SS Sequence:
TTATGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATGT
Flanking Amino Acid:
QNFLLDLRLTDKIVRQAGKL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
66.6
33.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.1
0.75
0.9
77.4
36.6
Minor 5ss
33.9
-1.8
3
42.1
44.8
Minor BPS
61.1
0.43
1.9
80.3
41.9

Associated Gene:

Gene:
TFB1M
Ensembl Gene ID:
ENSAPLG00000006328
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006580
52453899 - 52479720
25822