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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52507585_52515692_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52507585 - 52515692
Intron Length:
8108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTGCTTAATC
Flanking Amino Acid:
NPNTVLALQKVYFYWICRDP
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.2
0.68
1
76.8
37.1
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
70.7
0.63
1.7
77.77
38.8

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882