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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52523686_52526441_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52523686 - 52526441
Intron Length:
2756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTGATGAATA
Flanking Amino Acid:
FYIGLIIHGMGQLIRGQTSQ
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
46
-0.3
2.1
58.55
41.1

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882