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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52526614_52527665_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52526614 - 52527665
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TAGAACACAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CATTCTAGAACA
Flanking Amino Acid:
EMVKPTHNPVGEVLTTIAGV
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.1
61.9
44.2
Major BPS
80
0.75
1
78.6
31
Major PPT
49.6
-0
1
41.9
37.7
Minor 5ss
39.9
-1.1
3.9
56.5
47.9
Minor BPS
53.5
0.11
1.8
66.48
39.6

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882