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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52529748_52538474_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52529748 - 52538474
Intron Length:
8727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTAATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTTCCCTAATG
Flanking Amino Acid:
MVAYGISVNATIHIVAHLIN
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
71.1
0.48
0.9
66.9
33
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
67.1
0.4
1.8
71.93
41.3

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882