About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52538560_52540345_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52538560 - 52540345
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTTCACTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTTTTTCACT
Flanking Amino Acid:
LISFLRGANICCGGALRRQL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.6
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.4
0.46
1
76
31.9
Minor 5ss
39.6
-1.2
2.7
53.3
37.4
Minor BPS
59.4
0.38
1.7
75.46
41.9

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882