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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52540457_52540671_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52540457 - 52540671
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GTTATATATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTCTTTATAA
Flanking Amino Acid:
AYTYTRIMLGSTLAWARASA
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.1
0.52
1
66.2
43.5
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
63.8
0.43
1.7
74.99
36.3

Associated Gene:

Gene:
NOX3
Ensembl Gene ID:
ENSAPLG00000006709
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007001
52501838 - 52540719
38882