About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52593550_52594660_R

Intron Information:

Intron Rank:
149342
Intron Class:
major
Intron Phase:
Intron Coordinates:
52593550 - 52594660
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
TACTTCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.1
37.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.6
0.67
0.7
78
30.5
Minor 5ss
34.2
-1.8
3.3
41.8
44.8
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027851
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044878
52566606 - 52597589
30984
ENSAPLT00000030747
52593282 - 52597589
4308