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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52755425_52756217_F

Intron Information:

Intron Rank:
139217
Intron Class:
major
Intron Phase:
Intron Coordinates:
52755425 - 52756217
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TAAAAAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.8
0.69
0.9
78.1
40.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46
-0.2
2
67.12
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024936
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040550
52754207 - 52756456
2250