About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52853439_52862155_R

Intron Information:

Intron Rank:
152144
Intron Class:
major
Intron Phase:
Intron Coordinates:
52853439 - 52862155
Intron Length:
8717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
CTAACCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
60.3
0.26
1
65.5
28
Major PPT
85.5
0.8
0.6
80.4
31.6
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
49.2
0.02
1.8
66.56
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032192
52851115 - 52870604
19490