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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52859257_52862155_R

Intron Information:

Intron Rank:
152140
Intron Class:
major
Intron Phase:
Intron Coordinates:
52859257 - 52862155
Intron Length:
2899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACATCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AACTATTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
70.8
0.47
0.9
62.1
39
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
50.3
0.01
1.7
60.31
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030081
52857751 - 52870375
12625