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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_52923719_52923832_F

Intron Information:

Intron Rank:
125811
Intron Class:
major
Intron Phase:
Intron Coordinates:
52923719 - 52923832
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGAGTAA
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGTCCTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
61.2
35.5
Major BPS
74.8
0.62
1
67
39.8
Major PPT
83.1
0.75
0.9
77
36.7
Minor 5ss
28.6
-2.5
3.5
36.6
47.9
Minor BPS
61.1
0.43
1.7
77.82
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017780
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036340
52922814 - 52925043
2230