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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5299773_5301959_F

Intron Information:

Intron Rank:
127514
Intron Class:
major
Intron Phase:
Intron Coordinates:
5299773 - 5301959
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAACAGC
5'SS Class:
major
3'SS Sequence:
TTCATTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1
58.2
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
80.3
37.1
Minor 5ss
33.8
-1.8
3
39.8
41.1
Minor BPS
64.3
0.43
1.8
77.9
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018772
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044660
5294583 - 5303308
8726