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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53081934_53130144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53081934 - 53130144
Intron Length:
48211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
GCTCTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAC
U12 Branch Point Sequence:
GCTCTTCCAACA
Flanking Amino Acid:
MGGMQYPQQQIPPQYGQQGV
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
59.5
0.24
1.2
63.3
35.6
Major PPT
71.2
0.48
0.9
66
34.7
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
44.8
-0.4
1.8
54.09
38.3

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000047045
53081739 - 53369247
287509