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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53130286_53149539_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53130286 - 53149539

Intron Length:

19254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

ACTGTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

AGGTTAATAACT

Flanking Amino Acid:

QAQQRYQAQQDMSQEGYGTR

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

74.6

37.4

Major BPS

70.1

0.5

70.3

31.9

Major PPT

83.5

0.75

0.8

80.8

36.2

Minor 5ss

37.6

-1.4

3.3

50.9

45.8

Minor BPS

49.6

0.05

1.9

69.27

41.1

Associated Gene:

Gene:

ARID1B

Ensembl Gene ID:

ENSAPLG00000007574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029027

53081739 - 53369247

287509

ENSAPLT00000047045

53081739 - 53369247

287509

ENSAPLT00000022256

53081748 - 53369247

287500

ENSAPLT00000043079

53081739 - 53410723

328985

ENSAPLT00000017661

53081748 - 53399282

317535

ENSAPLT00000036304

53081748 - 53422057

340310

ENSAPLT00000032220

53081748 - 53399282

317535