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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53149651_53224018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53149651 - 53224018
Intron Length:
74368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
CTTATAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTCTCCTTATAA
Flanking Amino Acid:
IQQERPSSLPVEVLASEDAT
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.2
35.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.5
0.64
0.9
74.7
38.8
Minor 5ss
36
-1.6
3
49.6
40.5
Minor BPS
66.7
0.52
1.7
76.59
40.5

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000047045
53081739 - 53369247
287509
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000029027
53081739 - 53369247
287509