Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53224061_53270393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53224061 - 53270393

Intron Length:

46333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAG

U12 Branch Point Sequence:

TAGTTCGTACTT

Flanking Amino Acid:

ASEDATFGHKDLSGSIDDLP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

79.6

35.4

Major BPS

59.7

0.24

1.5

57.6

41.3

Major PPT

92.5

0.96

0.6

92.6

17.3

Minor 5ss

38.1

-1.3

2.7

51.1

45.4

Minor BPS

47.4

-0.1

2.2

67.88

43.8

Associated Gene:

Gene:

ARID1B

Ensembl Gene ID:

ENSAPLG00000007574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022256

53081748 - 53369247

287500

ENSAPLT00000047045

53081739 - 53369247

287509

ENSAPLT00000017661

53081748 - 53399282

317535

ENSAPLT00000043079

53081739 - 53410723

328985

ENSAPLT00000007893

53148846 - 53368738

219893

ENSAPLT00000036304

53081748 - 53422057

340310

ENSAPLT00000029027

53081739 - 53369247

287509