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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53270638_53286780_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53270638 - 53286780

Intron Length:

16143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTGTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTAAAA

U12 Branch Point Sequence:

TGTGTGTTACAG

Flanking Amino Acid:

SGPISPASIPGSQMPPQPPG

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.9

78.8

38.3

Major BPS

55.4

0.13

1.2

65.3

38.6

Major PPT

74.9

0.56

67.9

42.5

Minor 5ss

47.5

-0.2

2.8

64.1

47.4

Minor BPS

40.7

-0.8

2.3

48.29

45.2

Associated Gene:

Gene:

ARID1B

Ensembl Gene ID:

ENSAPLG00000007574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036304

53081748 - 53422057

340310

ENSAPLT00000029027

53081739 - 53369247

287509

ENSAPLT00000007893

53148846 - 53368738

219893

ENSAPLT00000047045

53081739 - 53369247

287509

ENSAPLT00000043079

53081739 - 53410723

328985