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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53270638_53302828_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53270638 - 53302828
Intron Length:
32191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAATATTAAAT
Flanking Amino Acid:
SGPISPASIPGFMAGIQRNP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.2
0.75
0.8
82.8
27.9
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
57
0.3
1.7
76.28
39.4

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000032220
53081748 - 53399282
317535