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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53286871_53302828_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53286871 - 53302828
Intron Length:
15958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAATATTAAAT
Flanking Amino Acid:
LSQSPMPQDRGFMAGIQRNP
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.7
38.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.2
0.75
0.8
82.8
27.9
Minor 5ss
42
-0.9
2.5
49.5
46.8
Minor BPS
57
0.3
1.7
76.28
39.4

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000047045
53081739 - 53369247
287509