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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53303009_53309466_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53303009 - 53309466
Intron Length:
6458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCA
Flanking Amino Acid:
GPQMSQYGPQGNYSRPPTYT
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.9
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
0.9
77
37
Minor 5ss
38.6
-1.3
3.1
51.6
45.1
Minor BPS
65.1
0.47
1.6
74.08
38.4

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000047045
53081739 - 53369247
287509