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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53309795_53327828_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53309795 - 53327828
Intron Length:
18034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAT
U12 Branch Point Sequence:
TTTCTTCTCATA
Flanking Amino Acid:
MQAAANSAQSRQGNFPAMNQ
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
63
0.32
1.2
63.6
40.3
Major PPT
84
0.76
0.6
80.4
25.1
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
46.5
-0.2
2
64.52
36.3

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000047045
53081739 - 53369247
287509
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985