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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53327975_53335533_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53327975 - 53335533
Intron Length:
7559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
TGTTTTCGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TCATGCTTAACT
Flanking Amino Acid:
MAPNMVNSSTAPMGLADMMT
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
70.3
0.46
1
71.3
39.6
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
72.1
0.77
1.8
84.67
41.9

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000047045
53081739 - 53369247
287509
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985