About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53345970_53353895_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53345970 - 53353895
Intron Length:
7926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTTTCATC
Flanking Amino Acid:
KQPKIQPPSPANSGSLQGPQ
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.3
0.71
0.8
73.3
36.8
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
70.8
0.64
1.7
81.67
33.1

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000047045
53081739 - 53369247
287509
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985