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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53359960_53363180_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53359960 - 53363180
Intron Length:
3221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
AGTGACAAATCT
Flanking Amino Acid:
HQPGMYPQQQNYKRHMDGMY
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
38.7
-0.7
2.2
57.1
44.9

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000047045
53081739 - 53369247
287509