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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53365014_53367028_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53365014 - 53367028
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TCTTTCTTTCTT
Flanking Amino Acid:
STVATFNLSQLSGFLELLVE
Intron Amino Acid Position:
1150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75.6
0.58
0.7
74
24.3
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
43.5
-0.4
3.6
74.69
42.7

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007893
53148846 - 53368738
219893
ENSAPLT00000032220
53081748 - 53399282
317535
ENSAPLT00000047045
53081739 - 53369247
287509
ENSAPLT00000029027
53081739 - 53369247
287509
ENSAPLT00000043079
53081739 - 53410723
328985
ENSAPLT00000022256
53081748 - 53369247
287500
ENSAPLT00000041722
53294872 - 53368738
73867
ENSAPLT00000017661
53081748 - 53399282
317535
ENSAPLT00000036304
53081748 - 53422057
340310