Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53368339_53410621_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53368339 - 53410621

Intron Length:

42283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TATTCATCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TAACTTCTAATT

Flanking Amino Acid:

RQEKLYATLVRPWFCKPLYK

Intron Amino Acid Position:

1687

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

69.9

43.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

77.3

0.62

0.8

74.5

34.9

Minor 5ss

38.5

-1.3

49.7

46.5

Minor BPS

50.8

0.1

1.6

67.86

36.8

Associated Gene:

Gene:

ARID1B

Ensembl Gene ID:

ENSAPLG00000007574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043079

53081739 - 53410723

328985