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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53368339_53422032_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53368339 - 53422032
Intron Length:
53694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAATGTTCAAAT
Flanking Amino Acid:
RQEKLYATLVRCLQELGA*
Intron Amino Acid Position:
1687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.7
0.65
0.8
73.9
36.8
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
46.1
-0.2
2
62.25
41.3

Associated Gene:

Gene:
ARID1B
Ensembl Gene ID:
ENSAPLG00000007574
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036304
53081748 - 53422057
340310