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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53441091_53441470_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53441091 - 53441470
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTATTTGTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTATCTTTAGAG
Flanking Amino Acid:
AIWKALGVHSVHFLHQDMRD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
65.2
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73
0.52
1.1
71.7
42.9
Minor 5ss
32.6
-2
2.7
37.6
40
Minor BPS
51.6
-0
1.8
57.31
44.2

Associated Gene:

Gene:
TMEM242
Ensembl Gene ID:
ENSAPLG00000021932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043566
53440836 - 53447687
6852