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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53441609_53446220_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53441609 - 53446220
Intron Length:
4612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTGCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
GTTGCCTTGATC
Flanking Amino Acid:
KKKNPNWFSKGMTATAALPE
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
69.7
0.6
1.4
74.28
36.9

Associated Gene:

Gene:
TMEM242
Ensembl Gene ID:
ENSAPLG00000021932
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043566
53440836 - 53447687
6852