About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53460884_53462045_F

Intron Information:

Intron Rank:
125145
Intron Class:
major
Intron Phase:
Intron Coordinates:
53460884 - 53462045
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
GTTTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
GTTCCTTGCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
79.1
0.65
0.8
73
32
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
47.7
-0.2
1.9
61.33
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017397
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020208
53459081 - 53462957
3877