About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53462227_53462787_F

Intron Information:

Intron Rank:
125143
Intron Class:
major
Intron Phase:
Intron Coordinates:
53462227 - 53462787
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
CCTCACACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
75.3
40.5
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
43.5
-0.7
3.2
69.6
40.8
Minor BPS
44.4
-0.4
2
55.31
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017397
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020208
53459081 - 53462957
3877
ENSAPLT00000019052
53459081 - 53462957
3877