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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53466200_53466888_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53466200 - 53466888
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGGAGGTGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTCTTGATG
Flanking Amino Acid:
MSPGRGRGGCGPMKDCEYS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.2
39.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
52.6
0.06
1.2
45.8
45.5
Minor 5ss
29.7
-2.3
3.5
37.8
42.4
Minor BPS
68.3
0.43
1.3
71.41
35.6

Associated Gene:

Gene:
ZDHHC14
Ensembl Gene ID:
ENSAPLG00000015573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016255
53466171 - 53572301
106131