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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53467120_53522900_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53467120 - 53522900
Intron Length:
55781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GATTGTTTAATC
Flanking Amino Acid:
LVTSGLFFAFDCPYLSEKIT
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
60.7
0.32
1.7
67.94
38

Associated Gene:

Gene:
ZDHHC14
Ensembl Gene ID:
ENSAPLG00000015573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035343
53466869 - 53573158
106290
ENSAPLT00000016255
53466171 - 53572301
106131