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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53562850_53571944_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53562850 - 53571944
Intron Length:
9095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAATC
5'SS Class:
major
3'SS Sequence:
ATTCGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
GAGCACTAAATT
Flanking Amino Acid:
YGATQSQSNMAAATPLLQSE
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
71.6
38.4
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
83
0.74
0.8
77
36.5
Minor 5ss
36.8
-1.5
3.3
48.8
41.7
Minor BPS
47.3
-0.1
1.8
60.55
42.8

Associated Gene:

Gene:
ZDHHC14
Ensembl Gene ID:
ENSAPLG00000015573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016255
53466171 - 53572301
106131