Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53599569_53600883_F

Intron Information:

Intron Rank:

131544

Intron Class:

major

Intron Phase:

Intron Coordinates:

53599569 - 53600883

Intron Length:

1315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTCAGTAAG

5'SS Class:

major

3'SS Sequence:

GTGATTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGAAT

U12 Branch Point Sequence:

GTTTCCTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.3

69.2

43.2

Major BPS

62.9

0.32

1.5

72.3

40.4

Major PPT

69.6

0.44

0.9

61.8

44.3

Minor 5ss

-2.2

2.5

35.2

40.7

Minor BPS

75.9

0.81

1.7

84.27

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026590

53599271 - 53603332

4062