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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53626738_53633170_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53626738 - 53633170
Intron Length:
6433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTCTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.2
0.75
0.7
77.9
29.8
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
58.7
0.35
1.7
77.46
39.1

Associated Gene:

Gene:
SNX9
Ensembl Gene ID:
ENSAPLG00000015762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037492
53626248 - 53672463
46216
ENSAPLT00000016467
53626248 - 53673905
47658