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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53633258_53635602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53633258 - 53635602
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCCATATTA
Flanking Amino Acid:
EGEIIIITNPDVGGGWLEGK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
59.7
0.3
1.9
74.87
36.6

Associated Gene:

Gene:
SNX9
Ensembl Gene ID:
ENSAPLG00000015762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037492
53626248 - 53672463
46216
ENSAPLT00000016467
53626248 - 53673905
47658