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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53636533_53647962_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53636533 - 53647962
Intron Length:
11430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTAAACAATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
CCTTCCTTACCT
Flanking Amino Acid:
TNSAAKSSNQANNASDPWSS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
59.6
0.22
1
52.4
41.3
Minor 5ss
37.7
-1.4
3.2
52.9
44.2
Minor BPS
72
0.77
1.7
83.33
44.1

Associated Gene:

Gene:
SNX9
Ensembl Gene ID:
ENSAPLG00000015762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037492
53626248 - 53672463
46216
ENSAPLT00000016467
53626248 - 53673905
47658